NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10022808

Scaffold Ga0222718_10022808


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10022808 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4307
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F003976Metagenome / Metatranscriptome459Y
F005591Metagenome / Metatranscriptome395Y
F010318Metagenome / Metatranscriptome305Y
F028971Metagenome / Metatranscriptome190Y
F051564Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1002280814F010318AGGAGGMNVDSDKPKYLECLYDTPITFDLEELGIKWDNVKNYYVKYGTLYVEFKDGKSGQYDGHIGDPDFKWAGHESILTEDYDLVEGLNXCISLLIGIVNT
Ga0222718_1002280815F003976GGAGGMSRVYNDYYFEKEDVLDTLEKLDISVRLLNVWVNEPMGFENAKYLLEKNANQKFDWFSRDMVKELVEEEAQXMLIAINQSI
Ga0222718_1002280817F051564GGAGGMSIPKQMIREWCETYEEAIETLDYLANRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVEEXKLGVV
Ga0222718_100228084F005591GAGGMKLQFKSHSIEKDIAWTWTEMDKAYWDTWIPKKSDLIILTKLNKEQKKLVLDELWEDLQISIQFIRDRNNARRRAKRLAQKQKVX
Ga0222718_100228086F028971GGAGMVEIKDTELTPMTKEEFRAWEDYVIKYNENNPKDQICYELTWNKDEYKVKLLDLRVDNEGQE
Ga0222718_100228089F003051GAGGMKVKHLKTKVNIDMSVSEYDTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSKX
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