NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10066268

Scaffold Ga0222718_10066268


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10066268 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2225
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F015990Metagenome250N
F087206Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100662683F002399GAGMKTKIHKSIIGQLRKKYGLKDNTPIHKVEQIMTPEDWQAFSTALTFPNGKPSQRGK
Ga0222718_100662687F087206AGGAMSNHYTEQHNEQELENIQSYVLEQDRKGLLDDEIDYTAFAHGLHPDDDRDEILEYIAESIFYEQTIGDLV
Ga0222718_100662688F015990AGGAGMGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDDINNHVEKLLKEDKLTTLTKTLNA

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