NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10092445

Scaffold Ga0222718_10092445


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10092445 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1799
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025038Metagenome / Metatranscriptome203N
F048992Metagenome147N
F054022Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100924451F025038N/AARPFWQDICTVNGWDIVKDDEDFKEDFVCQINNELYYMELQVVGYWHNFDLSYISNVRISASKVKLLREKKNGGLVFLNCVPNRFFAIHVNQVTEDMKKDSVREQFYEIPLRSINVNEVNVLDTDLCDCLENHLPIMKRSDGRMAFAQKDYNIRGANGICC
Ga0222718_100924452F048992AGGGGGMEYAADDINYGYMSILMHINSEYTLIDKIENIREIDGTIVHPIFGTNKGGVTFTLFLRGFYTVFEAVMNFGNRFDVYVVNEQGNTTMIDEDLDHLISLLHILYINKKAEEDELLNRALNPHTYRKVAKKMFYNEDPPF
Ga0222718_100924454F054022GGAMKQQLPELKKHQEVKFVEAATDFIDPPTQEILWRYGKILFQVKSEHGAISYYIEENKKKVKISRYLIFPVN
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