NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222716_10000214

Scaffold Ga0222716_10000214


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10000214 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47962
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059467Metagenome / Metatranscriptome134N
F084868Metagenome112Y
F102080Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_1000021441F102080N/AMFIKQTTEIHLHQRESKLGNVHNFKRRRTVYHFKCDDCGKEFLRDKAKVTAKRASNDYHHVCTKCDVHRYAQKVGVEMRKIWSIDASSTEVKL
Ga0222716_1000021463F059467AGGAGMKKLIALMIALGFAGVTQAATITGTVEVDITENASNDYISTESIKFDVNGDSGVAFGYIKAKTNSSDQFIMDEYQIGANITDTASVSYGDQGDIFIGGGLEAVGANTLANPSDAGESIIGNFGALSVRGLFTDTDTDISDFSTIQAKFSTSVDKFSVGAAVNHTISNDNNVFAGSVAFDLNESVNLSTVVTHDETLTNEVAYESIVAMGPVSAYVDGDEGDWSKNVGAGYKSTWKDLGYYVEANYNLDSKEVTPAMGVSVAF
Ga0222716_100002149F084868N/AMKNRILKFMIEHEYIKTNSMINATIQSHGLGGSPVILKKDILFEDSAITPKGTIYIKGCDPENLKEYVVGSAKVHAVNGMDEPTIRRLFPEIA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.