NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10000251

Scaffold Ga0222716_10000251


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10000251 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44684
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (79.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008210Metagenome / Metatranscriptome337Y
F054890Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0222716_1000025139F054890AGGAGMMDRQEAIRDMMQSMAQGKASEVQDKFNNIMQARAGDALNDYKQELARSVFKNPELEAMGLADGEEHILEVDPAAEPETVETGDDNEDV
Ga0222716_1000025141F008210GGAMAVTVDVLKLTQVQGVVAVRGTADTGTIALATTLKKGTETQSSPAVNIKGLQWTLSSGARAYVQRNSKILYELIESGVLDFYGWADNDENDQDIEVVISGGTGGTVIVDCAKVSGYGSQEHQGADGDLG
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