NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10018179

Scaffold Ga0222716_10018179


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10018179 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5234
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007167Metagenome / Metatranscriptome356N
F032641Metagenome / Metatranscriptome179N
F038654Metagenome / Metatranscriptome165N
F042805Metagenome / Metatranscriptome157N
F046347Metagenome / Metatranscriptome151N
F055693Metagenome / Metatranscriptome138N
F100545Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100181791F055693N/ALNRKINQVTQLNRAENQLVNVRPRNNEVREAINEVRFAKSVVPVRENKLQTVLGNAEEVVVKANENMLTERKNAGPVNVPNVAPPAPKTKINARPNLANVRNNGVRVGNTNNVTGTRNVTGGAVPIASPVGPVRPIGEKTVNGDKEAKNFDRTLGEALAKIVK
Ga0222716_1001817910F007167N/AMEVKDAIFGFYLSPSSAVYIPKEGVETKKMKDGAIIKVPKYMYHPLTIEIMPRTDYKTIQHPKRKKFLFSMRETKPVPADIRKYIENPEPENLREALSIIQRRIRQMFETPIQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKSKVERDRKKAELFNIINNLLEDKDKIPYVSRMLM
Ga0222716_100181792F038654N/AMTLIIAILLLLLIIYYDRTRSLYIIQGAPIRVPDAPFAVTNPPNFANVKEPIGELTSMMLKNNVQVE
Ga0222716_100181793F100545GAGMESTDRSFTVIDIRRPGAKKTRSTVGEGGRFVSKTPFGAARKAFTRACREKKVKGTCKLVVTVQETTRGENGKVFAYKMKREKLDEPREISRGGGFFGGATPITIEYSISGVATDVPKDI
Ga0222716_100181796F032641N/AMNAVPNNHSCMAGLANLGVATAFGALMVSMEQTCGAFIVEGQRQRLDVMKALRAGGEVPELEIDDNQMGLLQAGRAFALVCLFGIFFMVTTSPLVSKKRIFPMKSFTYLLAGLAFLAFSLQIYLMRSIKKGITSSERTMRFSLAVIYMIFLVMSLFVMLNY
Ga0222716_100181798F046347GAGGMILYEWQTKMSELVEIYEEMGDHTRANTFSEAVQQIVNHAEQFDISIKTTKDVDKFKGLEGVGRSTLELFKEFVTTGEMKRLKDLKGED
Ga0222716_100181799F042805N/AMKVTFPGWLGWVEEMPEDEDEEEKVSIIEKCFMEITDVYAEKLLWPSIYMDEENGYDSEDNLERIWYYSDARSYLEEYLEENGYSRDYYHIMHVDATFHEPGKEPREVKFYVKEITCEIEHPGGNCSDEMFKWWVCEELYGDFDEYGLDVPVENYRIFLYCLNQAWQNVKALPECITKLIDKKRSTIKDDSLRVADENERTG
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