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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021959 Open in IMG/M |
| Scaffold ID | Ga0222716_10029574 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4002 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.0283 | Long. (o) | -122.37 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017147 | Metagenome / Metatranscriptome | 242 | N |
| F018943 | Metagenome / Metatranscriptome | 232 | Y |
| F074760 | Metagenome / Metatranscriptome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222716_100295742 | F018943 | GAGG | MKIIIAGSTSTMGKAVYEHYSKIYECLGVSKTTGYDFNSQEDQDRIVSEALARDIFLNIAHVGTTQSTLLLKLKQRWSPEAPLKKVVTIGSLATKVPKKLLDQVGIDKQYLRDKHHIDAVSSVLANETPFGQQLQFSLVRVLNYGEKTGERSGEPTCSAEDIIRTIDYLIEEPMYVSTLDVRRF |
| Ga0222716_100295745 | F017147 | N/A | MDKWNNFYKFKGGLAVTNMLYEPLVSDNKKIFCMNWNANKYFDNMEMTDELYNYWFNQEVKYLFKLKNKKYIPEIINIDFSKRTITFRWYDKSLHWLLETRQIDTIPNWQDKIKAIKDDLEKNNIYKINMYPHTFYFDDEDNAHIMDLYGCTDIDKKYLDVQFLKPLIRNDRFDKFITNNKLDTHELYKETIKTNYAEWPGDFLNA |
| Ga0222716_100295746 | F074760 | N/A | MLEKLDTKTDSKKLYQLLKHLPEGKNVLNKPTGDFFYDPWEVLPEYKDTVLDELLQQLPDHGEARLIVMKPGESYSAHADIDDRYHVTLDAEHSYLHDIENEVMFPTQADDSVYLMNTGLLHSASNYGYKNRYQLVIRKRLKNNTEIYDPRQVLMTVKNPVYNMRYLFDSSFSRMLNRFVKEGKVNNFARINETTVKYLCENESITEILRMQQICGFDIDIVYG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |