NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10081671

Scaffold Ga0222716_10081671


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10081671 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2218
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008114Metagenome339Y
F046646Metagenome / Metatranscriptome151Y
F073418Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100816711F046646AGGAMFYCIATKPLNDRTNGFRFNVLGLKGLTRKRKHASRGFKIDAGNCMTAIHLGKRTIYIERKPNRRSERRVRHFAG
Ga0222716_100816712F073418GGAGMTFDKANLKLIRTSMQEALDSAGIKDVTIKVGNCSYNGGEATYKIQVLLDGAETQEQNALSQMAGYFNLDTTKIAEIQGHKVSLYGYNGKARKMPWQVQSLDGKDKWKLTDEQVRRLFEKDYVS
Ga0222716_100816715F008114AGGAGMKLTINAKAFPDVDPDLLQEMLGVLPYWVGEYNLYGRDMDIVGFMTERYGFGNLYQFKGDVQDDGTYTTSDDPDLPYVGKMNTPNGNVYFYQYAMLALPLPDGEYFVTRMD
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