NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10085427

Scaffold Ga0222716_10085427


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10085427 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2158
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002907Metagenome / Metatranscriptome521Y
F032961Metagenome / Metatranscriptome178N
F038645Metagenome / Metatranscriptome165N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100854271F002907AGAAGMKQDPYWFFRKWGIQEPSPLETLAEKVEQLEERIKLIEQEMVGQSNALYECWNSLDARIDILAEDKTDV
Ga0222716_1008542711F032961N/AAPRSCEGFIIQQMSITEKDKIYKYVWQCAYQRRYFAMCKGDWDLYNREHETVLMCLNIANWTEFDTEKPKYFTKYQE
Ga0222716_100854275F038645AGGMLLTQTLRKMPELTQHQWKLIFTAVSSYRANHPLTVPCYKGMNEDLSLILDIIHPYANLDYETTDT
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