NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10249990

Scaffold Ga0222716_10249990


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10249990 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1094
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019909Metagenome / Metatranscriptome227Y
F020259Metagenome225N
F069998Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_102499902F020259N/AMIQLKMNERTFTAVADWAERIQMMTQENSLINAQDIVHDVFGMLRDDEHFIPRL
Ga0222716_102499903F069998N/AMTKKELIDFMSDYPDDAPVVIEVHDTTLYEDLYDFTFDGVSWKRFDFKANTEQEMHELRLCAINHSEK
Ga0222716_102499904F019909N/AMTNFEQHIGQELPQAILDHIEAHTTEELMRQAEKLKFDSWCPVVIENDSPELRKELKEASELLFKYVDFQLVTDEIWNSEN
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