NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10006607

Scaffold Ga0222715_10006607


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10006607 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9758
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013421Metagenome271N
F017147Metagenome / Metatranscriptome242N
F020191Metagenome / Metatranscriptome225N
F074760Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0222715_1000660710F017147N/AMGDWKNFYKYKQGPAVANMLYEPLVNEDSNIFCMNWNSNNYFQNESMTEDLYNFWFDREVKYLLKLKNKTYCPEVLDIDYKKRKIKFRWYNKNLNALIENNEINKIPNWQNKIKDIKQNLEQENIYKINMYPHTFYFDDKNEAHIMDLYGCTDKQTRYLNVEFLKPLIRTDRFNKFIVDNQLDTHELYNETIRTNYAEWPGDFLNA
Ga0222715_1000660711F074760N/AMLEKLDITVDSKILFDLVKHLPEGKNVLNSPTGDFFYDPWKLMPEYQGTAIDELLQQLPDHGEARVIVLKPGQSYSAHADIDDRYHVTLDAEQSYLHDIENEMMYATKPDNTVYSMNAGLLHSASNYGYKNRYQLVVRKRLQIRNLEDPVNIFMSVTNPVYNLRYLFDSSFSRLLNKLEKQNKLSKFVKVNDFNIKFSIEKSELNKLLTTQQLCGFKIDLIYG
Ga0222715_1000660712F020191N/AMSNLEAIKSIYQSSVYRDILHEIDGVVFPFSHKWKNIGISVSGGADSALMSVLLCSIISQLQTDTKVHIITNVRCWKTRPWQHQNSLDVYNWLTSAFPSIDFKRHENFIAPDLEWGSVGPNIIDEYGKLKSGNQIELRAHAEYVAHKEKLNAWYCGVTKNPDKKFDERLVDRDVVVDSLSDATLDRLIKAHMGGFACHPFTYVQKDWIVAQYKKLGIMDLFDLTRSCEGDKNTYPEIFGNLDYMTYEPGSPVPVCGKCFWCKEREWGVSKCQD
Ga0222715_100066074F013421N/AMNSNFHYYHNNVPGKGLCRNNLIYTSLINEDATEFCMWFHNDSEYHKGHNEVVDPTLMEMKWNREKEFLLWLDIDHKQLIPRTTRFDYDEQKIYFEIQGVDFWEQSHGKTYEDVLPNWQEQMLSILETHKQLGIYKYSLHPSSYFVIDGELKNINYFFAYRESEPAITVQEHMSHISKERQKELLPKMKQMGINMHNTYPFDQLQILCLESFRNVYPDSFINKAISIYK
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