NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10566355

Scaffold Ga0222715_10566355


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10566355 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)592
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → unclassified SAR116 cluster → SAR116 cluster bacterium MED-G04(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079709Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0222715_105663551F079709N/AKCEVDKPFTDFSCGGNLQLRVYQSKRKTFRSRLKRDGKVKTLDLGGYNPSELTFAEAKRKHDLAKSYFADGYSIEQIRSALKLGGNTVKFDAAIKAASNRNGEYTFAEFARIWWDNKAANKEWGSVKVAKQNWAYVENHAIPVLGNRSISDITRKDVIFMLTANNKWENKNPLMKKVWRNTRQIFSLSQSTRFELRL
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