NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000425

Scaffold Ga0222714_10000425


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000425 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48763
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (76.25%)
Novel Protein Genes20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Associated Families20

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000311Metagenome / Metatranscriptome1326Y
F000447Metagenome / Metatranscriptome1128Y
F000450Metagenome / Metatranscriptome1126Y
F001106Metagenome / Metatranscriptome776Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F003543Metagenome / Metatranscriptome480Y
F003663Metagenome / Metatranscriptome474Y
F003690Metagenome / Metatranscriptome473Y
F005177Metagenome / Metatranscriptome409Y
F005531Metagenome / Metatranscriptome397Y
F007470Metagenome / Metatranscriptome350Y
F008132Metagenome / Metatranscriptome338Y
F008357Metagenome / Metatranscriptome334Y
F014129Metagenome / Metatranscriptome265Y
F015730Metagenome / Metatranscriptome252Y
F044483Metagenome / Metatranscriptome154Y
F047650Metagenome / Metatranscriptome149Y
F081245Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100004251F003543AGTAGMADETISTRIVANADFSALIADVHKVTASLSKLQEQLANSNKMMANQIAVMNRSFSDTLRSTGQFSTHFVSLQSDVEKFGKNLDGGKLKLNQYFNTFRDHARTSGGLIRDLAKQQVDLQNSVLQPLGRNAQGLMQFNVHVPRGLDEVKNKAA
Ga0222714_1000042530F008357AGGAGMAGQKNWEVDQNTTFSFIVEYKDPNDIPISLVGATAKMQVRDTKGGSKLAFTLTSPSTGGITIDPALGKLTIKMTPTQTNKLFYPKSSYDLMVIDSNGNKIKLLEGFLTLNRSVTI
Ga0222714_1000042538F044483AGGMVNKIYIDQIAYKMNRAKKDGYEDTTKSAAALLWMVEKIESRLNKCLNVENGNCNMTWRHDDCLVLMELLYDLTNDEKYAEKPWIIDPNKMSLWD
Ga0222714_1000042547F081245AGGAMIDFVKQLEVNNYLADEQVDPLAKMLDELISKGEYK
Ga0222714_1000042548F015730AGGAGMLTQTTLDKIVYEYQHGGVKGNHPELTTYERKALLKHLFSLPTHCGGCGVNHTDTRG
Ga0222714_1000042549F005531AGGAMTITYSIWQGSNLLSVDNTAKNSEEILSVMAELNKLGKGFTYNVRKVDTK
Ga0222714_100004255F000258GGCGGVTANYKLDAMLELRKYLWKELYTRNIFDEDDYWSDNLNENIIPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTDISEINEIRNYMTDEFRRVDESARSINKWSGLSDKFKFHSVHIADISPTAPSEELQGFFSTEIILEIKYSRITDGQGRFL
Ga0222714_1000042550F008132AGGMMTKWDTIQEDIKDAYAHLDDVEELEQEDEEDFFGFSKAIEIDHLTDEQLDMIGEMFN
Ga0222714_1000042551F003690GAGMIPNGFELIISNDYGIEFDSFLGAIYLPWHTIAIATALLIAYKIYKRKKNK
Ga0222714_1000042553F014129AGGTGGMTTLKIREITLSNVSADEANLIVCAFCSDYANEIFCGKCNEYKGLMTLGEWLSYTQESWV
Ga0222714_1000042557F000447AGGMGYIEIFRMNENGAGWVDLSEATTAELLDLELGLLHEGALFTKPEAD
Ga0222714_100004256F001900GGAMLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYEASVISKLTTNKPFQNAFTKIMFDQINLDFGNYIDALARSRPKSLHHVYEWKKTGNKTARLFKLKKLIGEGLSFRIDYELLPSKSMVPSNNGRRRHVFVNKAAIIEEGKPLVIKPKNSERLVFEQDGETIFMPKGQSVTVKRPGGSAARSQFTLAHSRFFSGRLVNESIKRSGFQKIFNSSMTKALRVPSNIKKVQYSFSPNAIRSQADAALTASFGGAM
Ga0222714_1000042565F003663AGGTGGMLSTALEILDATKDSMFDDEIMYLAGELHTRRNELPDEIFAKYLFMYSSALSAKVADSITKILLTKEEMSALCDSIDEMENLSETILEENE
Ga0222714_100004257F001229AGGMNELIESVLSMHLDVYRQSDMQDPDTGAIKREWNYYKTINCHAKGVISNSATTRSSDKQIFSNKYINDQIIQVRTSDRLVSREKVTNIRDQNGTPIWTEINFPNETPTVFEVMGTTPITDPFGRVIGYNSSMKRSENQQIGQ
Ga0222714_1000042570F005177N/AMKNRYRVEIYDEVKANDLTIYSEQGVDKEYLTELVFSNLRRFSGNVRAYVFDNLKKKKTTALFLPMEVIPKKTELTKLLG
Ga0222714_1000042574F000311AGGMYFELTAPDRLSMEMAYWDAQVLGLDPVALTPLTFNIGTGNIEKVSRLRDKYNLIESYTSDYEPTGYTRR
Ga0222714_1000042575F007470AGGAGMDYQDGFEDGVKFAREVIVNNIRLWAETSEDGQVMDDVADRLEFGTVDYDL
Ga0222714_1000042576F047650GGAMTSEDLNVVYYCDSCSVARASHLIKLLDGELAFCGHHYNKYKGALDKKAYEVIELNKTEEAVPQLEKAE
Ga0222714_1000042577F000450AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWGSETGWGLHVNEIGDNEHKIAIVDFDQQTFSLHEEAPRNDKDNKVNGMSNQPLFTMDLSNFVEKYADVTLSV
Ga0222714_100004259F001106AGGAGMSFETLKVSELKKIAEDFAVETEGLKNKADIIAALAEEGVTWSVYNKTIEKMEEDSEDMATEVLPKFDPKADQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMSKEYAQEIFDKEDGFRLATPKEVQEYYN
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