Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10000579 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10000579 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42000
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	67 (94.37%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

42000

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

67 (94.37%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F012670	Metagenome / Metatranscriptome	278	Y
F056409	Metagenome / Metatranscriptome	137	Y
F062715	Metagenome / Metatranscriptome	130	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000057911	F001059	AGGA	MATYDIEALKADLPTAKDLAQFVYDKTQIALDLIGKSKEDQYQVAKNALEGKKVPAEFLTDENPYVDRKELIPVDEIRKLPPRSDDLPPVDSQIHFFGATNMPHPLDPQSDRKVGINFKKYFDGTITYQVMGPLEQQAVGSRINKYGQNVPEKYTWLDPRTEELVMRYPNGTFSKTGQGLYTYLVGEKGAGIWPLIDRDIVSATSKNIADPWA
Ga0222714_1000057914	F004695	AGGA	MLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPQGKVNFEFERISENDEMGSRQAMKMALHFINSKNDSYSIIRDWAQDALLHKTGVVMVSPVRNPITQYKEVEGTRDQLRSFEIMAAEKGLVAKRQQMRRIDVNLEGVAQETMMDETGSPVEPTGEEVADAIKANTIYRAKYKLTGYSTNIQIKHVAQHYFVCNPTIPGIRNQDFCGFYDPMTIHEAKSQFPYIDIEKFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMITTAWLKRDIDNDGEEETIEVCYSGSYILYIKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFVDAEEIQRGVSALFILDRKFDPAKHVYEFAPMQGNLAYVQDAMERFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAVGLKDLIYIVWKTMIQYSDDYNIQQLAEAMLPGSGGFLDAKSMENFEFIDRNMINVDLALGFLSDENRLTRQQLISQAQQQFAGILMQLDPSVPEMFEKARRPFEDTLYALGVKNCDSYLPTFEEAAKMLQAKQAAGPGVAEQEVQSKVELNKAKTQESATVAALNMKKAEDIDMDNYFEYQAMKAGKLSAVQVD
Ga0222714_1000057918	F000857	GGAG	MELNLNNEEAKVNEDYFLKGNLEAGIEGVVRKNDKLYNEVKSGTWSQTFKTNNIDYKIGALDGARYVQYTQHNTDHIKQYCKERREFYQMIGTTDNPIFAGTFEAMSLPKAIAHSISSKYFNNRPWELIKMDKKDKILFYAIVNEYYSEYVCHPSGKIPLPYNPAIPTK
Ga0222714_100005793	F056409	GAGG	VKPLTQRQKQLIASNVIAACRDIEKLNKTGYNYLYQCSGFIAHYSLQGFIAYYSNHSLQADIEANARFNQWKNFTPNDQHYAYYMEKRDCYNMILGRLVAREALNEQFDHAMQFLRDHLTVIHIK
Ga0222714_1000057938	F062715	GGA	MLMLGSALKGIRSCCEMLNQGKAEIQRIKKGVEDAKAIVKDVSGFFGWITSLFSGAQNADKAPQETLKSPQTPQKKEEYVEYIPDEDAIIDQFIKHVGDFFKAQAYLVAYKEDLERKVFGSSYGDNNIGALELISIETKLVKCGAELRELMNEAPPQLGPLYSRYKAMYSKILDEQKKARERDRKNEKQRRVLKVKTENDRIDRCVPHWVTLGLIIFFWVFLWLIQSLSTMQKSTFGAWFSSPQYVLSHSQLLPLSILTTRFLANK
Ga0222714_100005797	F001915	GAGG	MEWSLAHPLHDVDDIVNLADGFFGHEADGILTRSRDVFRHRVTVATTEQLFNKSREFIAVCWQHDRNGVPEKLFGFCWFDRGGYTTYSNEEISNAKFHHVDLSLSPRIRVKLINEMIDQHILWAHTWGIPVVCSTSIRSEHDGFMKIHRKRGFTVNGSYAWIRTEEAAKCLINQ
Ga0222714_100005798	F012670	GAGG	MFDQPIRPEGSDVSSEDKKAQARAYAAQKRAAKKAEKHAMGLVTGRTAPEGFVNKGGRPKSVVNRVTEYGALFNKLNEAHVEKGLPPLKTAMEVLIEAMQSDELDLKEKAKIAEKLATFESSRAPVISIEHVQNLVKEEDVSADDALDEFLDSLRKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10000579

Overview

Ecosystem & Geography

Associated Families

Sequences