NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000723

Scaffold Ga0222714_10000723


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000723 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37663
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (34.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021298Metagenome / Metatranscriptome219Y
F066765Metagenome / Metatranscriptome126Y
F080645Metagenome / Metatranscriptome115Y
F087139Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000072323F021298N/AMSNSVIISLLGRANNGNELLQILDTLAADNVSEAGYNEPTADVIDF
Ga0222714_1000072324F066765N/AMLNFIPYAIRRPFYYVFDLIACSDFRNEELDRIFNAEGYDQSMQILGFINYLGITGQLDLPENFDLFADVETLEQAINKWEDYQDLMNTSTLA
Ga0222714_1000072328F087139N/AMLLSTKSFNDNKVLPFIVKQEYELHQEGIYSLHLFSRTVITKEGKKYRYLPLKFEGELARFKKRSDAEDYARYRLALD
Ga0222714_1000072331F080645N/AMTLTSEQVSDLLVAHCNRVIDNMDMDDLVSYAVQMMMSSFDQNPGQGDTDVAMLIEDIWVAEGEDDDSTQEFIAGIVGDELAEEIVTTTQF
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Institute for Fundamental Biomedical Research
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