Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10001222 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10001222 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29062
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (51.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29062

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (51.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F032582	Metagenome	179	N
F045703	Metagenome	152	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000122210	F032582	N/A	MKTFGIDAVPIYGFRSDNCGISTDYYHSTEKEKIKVKTIVAGLSHFSIWSAIKWMVESKTTDHRTFLVVEDDVEFTCADWKDKLSENLDHLPNDWHVVYIGSCCADPIEDHGHIASNLYKLVRGMCTHCYLVNYEGACKLLETNQKVWCPIDIQMLVDSMPRMNFYGILPRLATQENSNLYA
Ga0222714_1000122215	F004664	N/A	MTYGSNTGYKLLNDHRGLPGGWIYRVPETGIEVFAGSWPQLHEFVRRHYAANAIEVPPNLDDLMLEYICKNGADCAYDDVEIPKPAGRKSLQIGDVIRFSMSLLHGLTVGGGKVSQEEANRRANICSGCRFNRKPLGCTGCNARVLKEAVKTFSQHGSTPYDEQVQSCEFCGCFIRSMVWFPIETLHRFTDATENENLPAHCWKKRPCTET
Ga0222714_1000122218	F012111	AGG	MSERAPRRYTDGSVTFEGGIDSGVMPSEVDKNQVAFAVNANFREGFISPRPGFVQKDYDICVTVTADNTEITADQTNVTADGWSEECYGPQGLTGTFQCALPYISDDGRTFILMLISGKVWLYNCAENNAQSLSLSADLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTNLRRAADDEIKCGRVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAIDGIRSFIIARRSFNDWGNTPISGEMTPIVENDQSNLLWASSAVVFDNRVLMTSQPRFNSEGVIHKAISVLDMELVTSMRKKAPPAWSGIWTGLNVLQLVKTENAYGDACFAIARGSDGTIQIWEITKSDKFDSNVSDPKKEIEWLVQTRAYNFELPFGLKKLDSGDIFIDSLSGSAAFNVQYRPDQYPGWLEWTDWTECAIVDQCLTGLCPITNFQPQYRPKMRLPTPSDIPCNESTSTPTRNLYEVQLNIAVSGYCRIKSVRVHAYDVQESPVGECRTYQGCKVIDACDVNPFTYTSE
Ga0222714_1000122220	F005740	GAG	MKLIVQDIRSTIARVIGVCVDDARVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNGNQVCIGKQLIDRGTVVSYRDMSGGLNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGLTWIDGEKLTLALPYVQSTKKFTELTGVIREATNTVSRLYEYNATTALESDLAVYDPDETLPQYRRSYLADRCSDEADKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0222714_1000122222	F007361	GGA	MSVLFSLEADCIGLHEQGATDPNWKQSIEEYRTRYKYVADCSTYGYLPKAVVSDSVKVYVKKDAEASAKECTERFGYEVHLPSVQALREYADSWASLHGVMIVEENELFKLDTLRRVWVHCFQNERAFPEEKAARLVTMNIQRHEPEKVFSIENGNRLVKEVF
Ga0222714_1000122240	F045703	AGGAGG	VNMPSNLSVAFVYKHKMTSEVLVVDIDRARELDAARPYWQHVSTVNPIIILQLIVKAKGRARTKIIKELSEKP
Ga0222714_100012228	F012040	N/A	MINWLRGLKKENPKNLLDLPDINLSDWQTDGQQAELAQILNMPVLRMALRIVAESMPVPMPSHGSKESDIIFAAGVTAGYAHCLENLRKLAVTETAKEPEATFDKQY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10001222

Overview

Ecosystem & Geography

Associated Families

Sequences