NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10003471

Scaffold Ga0222714_10003471


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10003471 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16037
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (69.77%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Associated Families14

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004133Metagenome / Metatranscriptome451Y
F015601Metagenome / Metatranscriptome253Y
F024558Metagenome / Metatranscriptome205Y
F035768Metagenome / Metatranscriptome171Y
F039639Metagenome / Metatranscriptome163Y
F039640Metagenome / Metatranscriptome163Y
F054039Metagenome / Metatranscriptome140N
F061859Metagenome / Metatranscriptome131Y
F062765Metagenome / Metatranscriptome130Y
F065787Metagenome / Metatranscriptome127Y
F066790Metagenome / Metatranscriptome126N
F078723Metagenome / Metatranscriptome116Y
F080054Metagenome / Metatranscriptome115N
F081346Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100034711F066790GGAMLSNLTQRFRNMFKPYTLEDFISESDPKDYKDIQRLEAVWQNYQERKLFNNCY
Ga0222714_1000347111F054039GAGMIEVSANYKRLAKVLNKTRKSLTQTCHELGIDVDDIEDHVLVEVIDQCSHCNIWSQQLVKDLDYNPVCPVCVRLTGL
Ga0222714_1000347114F080054GGAGMSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLKKKKTIPRLFMPKIS
Ga0222714_1000347115F078723N/AMSYDILINSLVNGESVTISKPDGTTYQEPRPPNRTALAAAKALQNLQNQLNFGTSAINQLTKERNELMDSITRLQEQNKRLQDEINAKTSATSSTAGDSDSSAAK
Ga0222714_1000347120F065787GGAGGMKKLEYYEIRQTCKLIDYDLKLAGRGKLWVEVYRDDQYEYRALFPDVADWSAIPMTILTHPIHETQTNLS
Ga0222714_1000347124F024558AGGAMIVVLYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVSKPMGFKGEKIPVGMVGNEDMPTVRIRYEKLRWHDGSLKTLLVTPDEELALTLTPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQS
Ga0222714_1000347127F039639AGGAGMNIDREFVKWFYEDAYPEQGSNRRQVYSVTQSSQNINVIDYWMREAFKAGAQAATYGYEVNALEQFEAFNINRNYPL
Ga0222714_1000347129F061859GGAMTIEIALIILGLALAACYVVLEYQKLAKPPYQEPVKPDMVDQWVAATKADTLDNIDNWNAKVGDKIWHKEAAAELESTPINPQAAWPFPTGRQP
Ga0222714_1000347130F081346GGAGMAKPDPNKPITHINPPTTVPTRVMPHKPGYADQVVVPETEANPDKPKKPKKPRK
Ga0222714_1000347133F035768GGAMKITIEDRLLAAYHAQKLRLRDREDEDYRARIEDKAFEKIIVERVRRNLRLDLDKGTNIDLEV
Ga0222714_1000347135F062765GGAMSWYRTRGLTQTETKIATENTMFTTEGEPYTSESITTHYSCGRIDVHNVPGEPYGDEINVPPMLSTDWAMFSNWLDTVKTLSIWTLPDLVTAYQQHNPKITWDTYDG
Ga0222714_1000347139F039640N/AMNIEELLKQSQKTAGEIDILHYTNLILLEACKLIKDTPTTSAFTTFDAAVAETQRADCFRAVYDQIVRNIEDVAATK
Ga0222714_1000347142F004133GGAMKYTKEITDKLIADYKAGIAVADISAELNVPERSVIAKLSSLGVYVKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIENKLAQSDPKLHYTRQTDHLFADV
Ga0222714_100034718F015601GGAGMAGYTKEFLIDAFMSRYLGCDHLSIEKLERLEKMANDLYDRVGRDSFRVYACLDAEAIREYKNKATA
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