NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10006829

Scaffold Ga0222714_10006829


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10006829 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10572
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007260Metagenome / Metatranscriptome354N
F023575Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100068295F007260N/AMTVLQGALGNPAFIWQGQLVRCLPTSITDANAVISGGFQDNLAARLLVKLDDWRLADSTLVTVDATVWSADVGSTADKLQLESGSLLLQENTDRLLLTFGKMMPVVGRTLTYDGRVLRIVSAKRDASGGFYVLELSAKTR
Ga0222714_100068298F023575N/AMATSKGSVLVYGAHGDITLYTTAGAALTTGAITTIESYDITHEGDVEQIKNGAGVVVAQVSENERLSMSVTFIPSAASGATGDAQSKLAASLPAVNGWATIANAKAITFGGATGTINGDWVYAGGGSVKFTNSGKVMITLPLTKYIGTGAMAGNATVTTLA
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