NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10007034

Scaffold Ga0222714_10007034


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10007034 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10387
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043829Metagenome155Y
F059966Metagenome133Y
F060909Metagenome132Y
F085713Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000703413F059966N/AMAQKTTSSITEYIKGNQRRKNARWLIRDGEWLFEMQNGIWGSQELFDEFYPTYEYVKFNDKGNNPDKTKIR
Ga0222714_1000703416F043829N/AMSEMQLPKWGDLNINERHKLLGELIDAMIYSGEAVQELQTIVEQFRMMGYVRSVILPQNVDHEA
Ga0222714_1000703418F085713GGAMGSSVVSFIHHLKLADEYAKDFVRSAPGTRGAVIFDNYSKRIAWIFRDVITYPHFGDEVREGMRREIASDAFSYDSLIEKVALLNPEQRDMLEGLLTDILKGKTVEINIL
Ga0222714_100070344F060909N/AMKRKGFYIKKNPKGLYLNIFKPDFIQYINDQTGEWVKFSIYEKINDPKGFTHNMELIQQKDKEQDNHTKLID
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