NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10011557

Scaffold Ga0222714_10011557


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10011557 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7501
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F017801Metagenome238N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100115573F017801AGGALSDLDPIISTAKAATKSIKSAIESGREVSSAVESIQNFGMAEVKARHAFKAVRSRKEGEITIMTAMAEWRRLDQIRRMELEVKDFLIQQFGHFKGEEEFEKVKKIKDDMIARHAKSKDAMGRDIEKLRELQIICVMLAFLVVTIYYIMKGHL
Ga0222714_100115578F000324AGGAMVVSIAPKHSFTYDGAQINVFHANKGEGLPRHNHVYAHATFCTSGSCYIRKEGKEVLVDKNTQPINLVENEWHEIEAAEDNTVFINVFAEGKQ
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