NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10012931

Scaffold Ga0222714_10012931


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10012931 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6968
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y
F053291Metagenome / Metatranscriptome141N
F079977Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1001293110F000980GGAMSVAWCIILFMTNELISSKYTFACDPEHCDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPTTTEEVKMETTEHLVPDTYNSNLLVTYKKINGYSNPEYITDKVTSIEWDLHNARQSQKTLSSLQSKIDAVKEIICEAYADSQDQDTLRDIAQALGIELIKEVQFTASVEVTGTYSYDVLSDYSEYDLESVITDSLYAESNDGNITIDDTEVCNVREA
Ga0222714_1001293116F079977AGGAGGMNNLYSILAELHPAGDFTEADLWEAIAESQGVDVNEIMDQDLTEYL
Ga0222714_100129313F053291GGAMITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC
Ga0222714_100129314F000868GAGGMSDPYDTIGHYRKGGSMSFLENENQMVIDAIYQEIGEQLVEDWTNSNLDEGQLYADFRFAEMSSDNYIKGRFNQFYDLKPGDQYYLEWDEEA
Ga0222714_100129316F001125GGCGGMGDRANFGFKDQKGDTIFLYGHWAGHDMLAKLANAVSAAETRWQDPSYATRIAISHLVGEDWNQTLSWGLYVNQLGDNEHKVPVINWASQTFTLYEEDMSTVVFSLSLAAFVDKYSRLVM
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