NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10023935

Scaffold Ga0222714_10023935


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10023935 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4695
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F009125Metagenome322Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100239354F009125GGAMNSDNIRAVLTAATPVAAMVSLSQVNEVAALVGTLLGIAFLLWRWRREAKKED
Ga0222714_100239355F000273GAGGMSDEGSKHALIEKAAFAVLPILFSCVIYLMSSLASISHEVTVLRQQVSLVVTSDNKQATNTGAELAREKLRQDLEREIQHNRDMIAENRTSIAIITERIGQFKK
Ga0222714_100239358F005113N/AMTKDEHKSAIVQQLQQQSLNLLVDSLAAALAEIEQLKAAAADKPAP
Ga0222714_100239359F003579N/AMTIIPIAPYTMGSPAQPKVGTQFEVRYIQYTSPTAVADCHLLDAEGVEIMAVGLVPATAEQCAAWTDDAAFACVLAVNAGFELFFEEKLP
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