NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10025790

Scaffold Ga0222714_10025790


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10025790 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4477
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F016662Metagenome / Metatranscriptome245Y
F070119Metagenome123N
F081267Metagenome114N
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100257902F016662GGAGMVYLVATTEVIYDENYIIKEMLNTGEYGIHGHPISHEAIVEFIKDREWQIEHHLFLDKFDVPAQISIKDEDGTDLFFARNKYEILDNYPEV
Ga0222714_100257903F093864AGGMYEYNVEFVLEHMVIITNVSFDEPDLSDEFIIEEARQHLIGYYKIDPEVLYLQDVNVFEV
Ga0222714_100257906F081267AGGAGMSKQYHWVVVYDEDWGAFMVDAETTSVMLEEDRGTVYDKTTGRWEFAEEGSEEEAEYQRLEEILAYQMTRLDIPKKVG
Ga0222714_100257907F007525AGTAGGMPTMKTLEGVTVEYTQTIPTSKQMAEFYVYQEGAESYAQITYLDRVVDIERNGEMRFHIPETFDGEVIYKDKIIRYSDDLEAAGINDDIQLTQFIKTMGNAGYEIVDNNPWWEVFAHNEDMGEIYDTFYEAVDAALDYITDDRNWE
Ga0222714_100257909F070119GGAGGMNLNSYSVSDFIIPNCLEPGDIIKWEEEIYTVKSFEPTSDGFIINAIDEYEDDVELSIPDNVVLPLMEEQ
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