NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10042047

Scaffold Ga0222714_10042047


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10042047 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3260
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F003714Metagenome / Metatranscriptome472Y
F024551Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100420472F001923N/AVSPSPPINPEELPTEVKDGVVAAVLGGMAMCARLLLSTTPVSAGWVIRRVLAAGITSCVAGYAIAEHIQSPGLRMGAIGAIGYCAPEALDYLLKAFKARAEKEVGEIAGKKPNGKAKAPGKGKRKR
Ga0222714_100420473F003583N/AMAKQKPQAKESGSGNLLIAVILLTGFAGLSALSSAYIAGYVLDTLQSRDALVMIVTDAGIKSDSQRVEQGLSSATMALRSVRDLGWALAVGCLGVGVAVFLRSRRQNAS
Ga0222714_100420476F003714N/AMPNANHPSTETLTFAGRVLPLKRPMAEYAARRLQAILPQIAALNAAGKTQADAAAALDTTVCTLRQWLDITGTTWVNLNRRGPYAKRNK
Ga0222714_100420478F024551N/AMLIVKPDSLPRLWWLFPWSYARQLHRNCNALRALADKLDDEVTALRQSREHWIAKHDRAYAVAMHNERVIREMEERRR
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