Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10047820 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2993 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008242 | Metagenome / Metatranscriptome | 336 | Y |
F029747 | Metagenome / Metatranscriptome | 187 | Y |
F039047 | Metagenome / Metatranscriptome | 164 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222714_100478202 | F029747 | AGG | MKYQLMIDTDTCTSFSTYPHTREGLDKALDRVDKVRSKDGFKSANIVSDRDGEVFALDMSLAIN |
Ga0222714_100478203 | F039047 | N/A | MKMKIEVDINDLVALKVALTNSARRIDELMNDKPDWRNLYEFDKNSVEKAKKIIANMIAN |
Ga0222714_100478205 | F008242 | N/A | MKNLVKNATRHLVIKAYETFTKDKKSISVISLPGNVWEFENYVLSNRDFGFKFGGWYALDMTLVERDEVTFKRNLAGTNFGTPTNINAAYIVKQYNVTYKNEVLNESHVKSCKSDNIFAWFDFCGNPTTENINLINTATGKNVTYIFTFNTAWRMDTNVHPELRNLAVESNKAIATQDYLKLLADKLGLTLIWSFEYVSNYIPMISVCFSNDANVIADKSLTVMNVNKYKKNKLTNRTNTPITKAVTIKRDLSAVYVDTKAGIADGAICTKHNITAGTLAAVKAWITMGK |
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