NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10072283

Scaffold Ga0222714_10072283


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10072283 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2280
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F007468Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100722832F000441AGGAGGMKMSDKYLNDQLSTAQKLLWGGSETENIEAHNIIAKLIKDRIEQVEL
Ga0222714_100722834F000263AGGMDMTMEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGHLDALVALYELTYQLSFAIGARGEA
Ga0222714_100722835F007468GGAGGLTTQTKSSKFIEYMKIHLISLNQDLEADYNVQSKINIQGQIMATEHLLSVATDIMNNNERVY
Ga0222714_100722836F001460GAGGMLGYTEEDLNRMINAVHDSKLFYLRYPSDLMDKQPLRKDLEDAVSFLQGLWAEGYFDHTN
Ga0222714_100722837F002387GGAGGMESFLEDVNQMVIDAAISDISEHLFDEWMNSNLDEGTYFADRRFAEMSGDKFLYDQFNKHYELTEDDEDYLC
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