NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10089854

Scaffold Ga0222714_10089854


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10089854 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1975
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100898542F000258GGAGGVTADYKLDAMLELRKYLWKELYTREIFNEEDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQIMFTLYSTSVAEINEIRNYMTDEFRRMDESAKDINKWTGLSNKFKFHSIWVADISPTAPSEELQGFFSAEVILEVKYSRITDEVGRFL
Ga0222714_100898543F001900GGAGLDNSGLLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYEAAVISKLTTNAQFKTLFTKTMFDQINTDFGNYIDALARSKPKSLHHVYEWKRAGNKTARLFKLNKISEDGLSFRINYEFLPSRSMVPAPSGRRRHMFVNKASVMEEGKPLVIRPKNAERLVFEIDGETIFMPKGQSVTVRRPGGSASTNQFTLAHSRFFSGNLINASIKNSGFQRIFNSSITKALRVPNNIKKVQYSFSANAIRSQADAALVASFGGAM
Ga0222714_100898544F001229N/AGAIVREWNYYKTVPCHVKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
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