NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10092476

Scaffold Ga0222714_10092476


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10092476 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1936
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F074876Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100924764F000473AGGAGVSLNDSKHFYDNNHFKYGINQWTGEPNKPVFYTEEMKKRVREIKKPMLLLMDVAMYPDFLALRLYEDNFLQFDGSKKEEVIDYVSKVKKLIESYGVRCELEGIPSGRVL
Ga0222714_100924765F074876GGAGGVEEYYEIINIVYIYSEKVYGTVEQLGAFASVVKYQKDGTDHEVLLENDEFAIVDEIVFHHVEENNE
Ga0222714_100924766F000671GAGGMNKILCYSCNKNKHKLNAKKSSLLPINLLMCETCINAKLEPRWVIILAGRSSGADHVRDFVLKKRYLGNEISASELLV
Ga0222714_100924767F002060AGGMDYTSIVLAISAAILSGMGTAIISGIKESKKEKNRQKEREQDLLKLEIKDLKISLYKLERDLTDWKDKYYNAIQDLIVVKAELEN

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