NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10107229

Scaffold Ga0222714_10107229


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10107229 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1753
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F005630Metagenome / Metatranscriptome394N
F005879Metagenome / Metatranscriptome387Y
F047046Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101072292F005879N/AMFNEEVFWKDGFEGECRGGIFTRAVDLKKFLELVEVNENGNGGEVVGLRFDDNNLEIIVKPKN
Ga0222714_101072293F002303N/AMDIREQNRERAIQFAKEWNCENVSDHILDIMVSIMCTRDKSSYSGGGFVEAVVANNLYLAMSRADTDCRNNIFLLTMCNANCYA
Ga0222714_101072294F005630N/AMANLYEVNGFYGTRNRGTILVYETYSGKRWYCVEGSCNVNCTYDEINEGCDVETLSDIDTMSSRDGIYSARELCDFVIN
Ga0222714_101072296F047046N/AMNIVTIIAPKTQRDDLKSVIGKEVSENHSPTCRGKLIKVNKTTCTFEVVKSPYRSGDESRIGETYLVPISWAWNAFFF
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