NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10110466

Scaffold Ga0222714_10110466


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10110466 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1718
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001298Metagenome / Metatranscriptome727Y
F015971Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101104661F015971N/AMGTKSIRHIVEATLATYLSTQTGLTSVQFLTGDSAVTQTLPKAVVLCESARAPGDLPEGLGNYDCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIQAA
Ga0222714_101104663F001298N/APPAMGVFFCPPTKAGKYRMSLYSEFLADAKEMIADFGVAGSANSGAITFSCLISDPAVSTVLEAGGYCERTQYTVRLPAVTASWSQPDGSIGASAATLSGGVPIASLAQGKKIVAGGKNVRITTQTYKPGSAWITLLVIDDNQ
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