NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10160320

Scaffold Ga0222714_10160320


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10160320 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1339
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002317Metagenome / Metatranscriptome571Y
F002867Metagenome / Metatranscriptome524Y
F007971Metagenome / Metatranscriptome341Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101603202F007971AGGAMATKSKTALGRIEHTAGRPKTTSQGYGQHSRPRRRGKKKLVGQGR
Ga0222714_101603203F002317N/AMDHHEEATIHAEPPNNPFNQAVPALLTAAVLGLGGLFMQVAKLDQSVNTVVSDIQELKNDSKERLADLENRVRQIEMTVGRHSK
Ga0222714_101603204F002867AGGMTVVHTTDFGNGYSLDQLENERGELYYRACLNSICRYAEDHYIAMMYLEGMGWDPKADPQ
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