NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10213204

Scaffold Ga0222714_10213204


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10213204 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F019614Metagenome / Metatranscriptome228N
F085603Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_102132041F006181N/ALKKAQKPLDFHRSRGYSFGVMKKNLIHVIYPDEAVISFVMTTDMSTADILERVFAEWNHGSGMECEMFVNSKKRSLCVNDIVCVNGVYFQCANFGWNEVTAQYVNELEESVSAHPSRAEGAWFALMDVMWERQNVVVA
Ga0222714_102132042F019614N/AMNVASIASNKIQVEYSSRLGDNREFLTFSVPNGWDDVKKLTNRVLTYNNKDFTFSGWNSDRNECYFVRLVNGPSFVATIR
Ga0222714_102132043F085603N/AMKVQIEFDTDNAAFEDSFLMEVTRTLQQCKSALLDSERGTITIRRPIKDSN
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