NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10002463

Scaffold Ga0222713_10002463


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10002463 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19813
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (81.40%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F016152Metagenome / Metatranscriptome249Y
F024097Metagenome / Metatranscriptome207N
F054668Metagenome / Metatranscriptome139Y
F075841Metagenome118N
F101146Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000246310F024097GGAMANPNGRKGALFETDVMRWLRSVGAIAERLTKAGSKDEGDIVAIVAGKTYILELKNRKNISLPAFWEEATTEANNYAKARGLEQTPPAYVIIKRRNAGIEKAWVVENLEQWVQRHD
Ga0222713_1000246318F075841GAGGMKMNPKFVRRRRAVAIVIGLLLLSLFTYATRDVCWTGSGYGSCSVMIDEVISNGR
Ga0222713_1000246328F054668AGGAGMGISTRQVTVTTAATALVDATAEAETVVLHSSTGQCFIGNSDVTVSTGYRMDNGDKLTLQNKANGIWAITSSGTVTMMVLAIGS
Ga0222713_1000246337F016152AGCAGVETGIDPISLIDAPDGILEAIVIYLKEKAKAANKHGQ
Ga0222713_1000246338F004344AGGGGGMDGLNIKVKMTDGVEKTFSLRPRIIVDFEQKYGKGLAKLIGEEQKLEHIYYLGWLALKSNGVVVKPFGPEFLDTLEGVQLDTDPNSESTEIA
Ga0222713_1000246341F101146AGGAMTYTVISNREVCGKIKGDVITAKELQDAGVSAETLIAGNHIKASNTAPQIPSIKTETEEGATK
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