NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10012074

Scaffold Ga0222713_10012074


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10012074 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7674
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F021297Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001207412F021297AGGMSCSNTVNISQGNTFACTFTWTPGASGPANLLTTTLTSTVEDRAGKTYELTITKALDGLSFTAVYPGSTEDWAIGLGRWDIKFVFPGDTISRTEIFRINVIDSVTV
Ga0222713_100120743F001298AGGMSLYAEFLPDAKEMCADFSVPGSANNGAITFACLISDPAVQTVLEAGGYMERTQYNVRLPAATASWSLPDGSTGASTAIIVGGIPIASLAQGKKIVAGGKTVRITTQTYKPGSAWVTLVVIDDNQ
Ga0222713_100120745F001055N/AMSNSIRHVVESTLATYLSTQTGLAGVQILTGDSAVTQTLPKAVVLCDSARAPGDLPEGLGNYECSVRVTLFSNADDTTLAVHRERCAALSDCMKSLDLIQAAFAATSGAALCYDVTYRSEDEGIDERSWATSFAFDVLTCLEPE
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