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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021962 Open in IMG/M |
| Scaffold ID | Ga0222713_10015514 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6598 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009526 | Metagenome / Metatranscriptome | 316 | N |
| F009679 | Metagenome / Metatranscriptome | 314 | Y |
| F029096 | Metagenome | 189 | Y |
| F052591 | Metagenome / Metatranscriptome | 142 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222713_100155141 | F052591 | N/A | LRMSTNVVTSGEIETMLYGYLAVGVLVAGGVRRFNMTA |
| Ga0222713_100155142 | F009679 | AGGAG | MALITLSELKSVLGIGDIYADPIVQAVADSAENIILSYLIFDDVAINAVSLTSNVARFYCYDNTFVVGQALTVTGCGSPFNGSQTVTVVGVDEYGVTYFEAAETNADITKRLVIPNGRAVLTSQAALYDTTPEVREAAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG |
| Ga0222713_100155143 | F009526 | N/A | MVTTNSYANRKRRYAYQPTQRRDGHNQLERQVMPATYITGRNLTLTINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAANSAPDTSLAFSFDVNGDTFTGNLFPVFPTVGGAATDVLTTSLSFVVEDGTVARA |
| Ga0222713_100155145 | F029096 | GAG | MVMAETRTTITVRPDLADYRGLLKAINVMDREAQFELKNEVYSISSWTATGIQKAGFSHPYYPKQARIVAETVRPARDRVPTVYVGGGKGRVSGGANAGQLLFGNEFGGDRNAFGNVNAFPNGGYRFPPRTAREGRGNTGYWIFPTLKAMQPEIKRKWFAAINKVMDNWARTP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |