NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10016703

Scaffold Ga0222713_10016703


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10016703 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6304
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016262Metagenome / Metatranscriptome248Y
F019993Metagenome / Metatranscriptome226Y
F023325Metagenome / Metatranscriptome210N
F025232Metagenome / Metatranscriptome202Y
F095365Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100167031F023325AGTAGMRIISPLIEYLFASKKMKQVGSYEGAYTKSVYLPFTSNATLGQQYYLQPDEVLDSVNNFITGIELVDSSTNATAPTVPTTDPLTPGQASQGYLYICNLNREILAALPLYTLIRRLNAGKPNYLYFDEPVVWQNCFIQFESLGTAITTAHSVWLRVTYSPTEK
Ga0222713_1001670313F025232N/AMENVNEQILEDYRLVVARLDLMKAEVDEVNRANNKLRKAFIELLEAHQLELDQRDNQFYDRQETDYYWLDKAGILD
Ga0222713_100167034F016262N/AMIKFNKSTLTEIAGLGAGAVAGAYVTQKVLTKTDDKGVVTYLVGSDRTGKLIADAAPIVVGLLLQGQSNTFAKEAGKGMIAQAAGSLIKSKFPALGITGDGSADYSAGTMMSGLDTGVDNPMISAVPADDFSAPTTDFTGSSSGEMEY
Ga0222713_100167035F095365N/AMEKYILQAYEFYRQDVTTNYLSYEQFKKQLCKSSIPAWVLLAGGAAVGYSLKK
Ga0222713_100167038F019993N/AMKQEVKLILVAGLGYLGFKAYQIYTAIKQLSYAPTGIRFSINKSRGAIGGTLFVDIINPTAANIRIDGFTGTVTTTDGTMIGDYKGEALVLKPGVNNVRISWGSRSSLTLVNLAIGIASGKFPVLSFNTVYNIKGLPIPTSFKMNTAAYKPTFI
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