NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10018340

Scaffold Ga0222713_10018340


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10018340 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5956
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000868Metagenome / Metatranscriptome853Y
F001125Metagenome / Metatranscriptome769Y
F003422Metagenome / Metatranscriptome487Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001834010F063705GGAGMTKSSHFIEYMKLHLISLNQDWEDSKNSVPLNEDEYDPSDDYYVGATEAVEHLLSVASDIMNNNERVY
Ga0222713_1001834012F000263GGTGGMNSEDIGLPPHLQRMVNAGVSGLDILHGELKNLMLIAEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIGERTL
Ga0222713_100183402F003422GGAMSVGSCIILFMTNELVSSVYTFICDPDECDSLIQLTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATITSLNQTKEGNNMDGMTVENLPLSDSEKYNPDQLVTYKVISGYSDATYNTDKVRNIEWELHNARTNSKAVSSLQNKISLVKDIITEAYADSDDQDTLRTIAEALEIELTREVEWSATIEVSGTLTIDLLESTVDDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN
Ga0222713_100183406F001125GGCGGMGDRANFGFRDSKGETLYLYGHWAGSEMLHHLATAVAKAEPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEEDLSQVVFSLPIDRFVDKYSRLVM
Ga0222713_100183408F000868AGGTGGMSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQLFADYRFAEMSDNNYLKGRFNLFYDLNPGDQYYLECEEE
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