NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10023373

Scaffold Ga0222713_10023373


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10023373 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5132
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034177Metagenome / Metatranscriptome175Y
F034854Metagenome / Metatranscriptome173Y
F078411Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1002337314F034177N/AMSVQEQIDKIKERLEFLKTDRTVWTSAFAGPKGYTPYNHGPYFRKLERKRLNAKLKRLMKQI
Ga0222713_1002337316F034854N/AMTVQELIDQLTELKEQGHGNMELVLSVTDHTDWEYNLDFPGFDIGNVFDDDFDDLTDYGVCEVSI
Ga0222713_100233735F078411AGGMTDLSKHTDEVLERIQAHQILEILATANQSIDKALAQIQELEYNSMMFLDLRSTREIMDDINAIHLHLHFLQSAKNFAKQEIKEIGFYLN
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