NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10026466

Scaffold Ga0222713_10026466


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10026466 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4759
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004476Metagenome / Metatranscriptome436Y
F040618Metagenome161N
F093349Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100264661F004476AGAAGMLFSRNGFKSVDTTEAFVKEALEFGNKDVVLSITHETGVIDIVFSPTMDAINAEVFHFLNDGTELKYSMPIKSLTNNILSTLQMTSAIYAYMSEAFKVADMFRS
Ga0222713_1002646611F093349N/AMSIFQALPLMAQVKISAHDKNHSLENFTVLSQVKFSSMCKICKKTVTVDLEAELPVSGEVIFDICQKPEKKKKVQISS
Ga0222713_100264664F040618GGAMTVNIKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDVFAPEENYFNGVNSFGNEIWHLNPDNGEMCGKTYLYSTMTDRLYVPFAISQPTKEKSPTFLFEIS
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