NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10030767

Scaffold Ga0222713_10030767


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10030767 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4330
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F005741Metagenome / Metatranscriptome391Y
F034472Metagenome / Metatranscriptome174N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1003076710F001125AGGCGGMGDRANFGFRDRKGDTVYLYGHWAGHNMLENLSNAVGAARPRWNDESYATRICISQMVGEDWGSETGWGISVNQLADNEHKVPVIDWSKKTFTLYEEDLSTVVFSLTIDEFVNKYSRLVM
Ga0222713_1003076711F034472AGGAMPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQETYGMGDISLSGF
Ga0222713_100307672F005741N/AMLYFLSLLTKAKQMANRYRVEIYDANKLNDVTIYSEQGVDRDYLTELVFSNLRKFHGRVNAYVYDNVKKKKVTAMFLDESITKKFQAN
Ga0222713_100307676F000980N/AMTRYQKYTWVCTGDCDALIEYTIKDGYGWPGGVMQLTCPCNSKCTLLSVEDATIPYTDSPLPTKEEPMETETPAVTVPDTYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQAQKHNGVLNGKIDAVKEIICEAYADSGDQDTLREIAEALDIELIKEVEFTASIEVSGTYSYNILENDYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0222713_100307677F000311GAGGMYFELTAPDRLSMEMAYWDAQIIGLDPQALTPLTFNIGTGSIEKVSKIRDKYNLVESYVSDYEPTGYTGR
Ga0222713_100307678F001043N/AMFRTMSQQDIQGDKMSDYKDGFDDGYKFAREEMMEKLSEIDITDIDTWILDRLCEMIEGGKL
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