NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10038393

Scaffold Ga0222713_10038393


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10038393 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3770
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002037Metagenome / Metatranscriptome600Y
F003066Metagenome / Metatranscriptome509Y
F011384Metagenome / Metatranscriptome291Y
F030690Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1003839310F030690AGGAMQRSEIEVICNHMLGRTIVSCEAEHGDSTIIIQLDDDSYIEISGEELSVYGELTPRDD
Ga0222713_100383934F003066AGGAMDKQPLAYLYEEFDVKSGDLKKSYLWSFHPNQLSYMNDLKNTTHHIKITPLFPGEPVEEYKGLSRYDSKKLTEAHGGL
Ga0222713_100383936F011384GGAGMYTKLDDQRQAKFIIKYIEEHPGCSIKQIVQQCVTNRTRLKYLESQGYFSLPKWTYSNELDKRFKNRHYVSVEVGREYGKWKGY
Ga0222713_100383939F002037AGGAMSKIYWIFVIVMAALAIWGTEKALAQSTTILAPDGSVTICQTGSNGIVICV
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