NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10051675

Scaffold Ga0222713_10051675


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10051675 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3135
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F007468Metagenome / Metatranscriptome350Y
F009685Metagenome / Metatranscriptome314Y
F013184Metagenome / Metatranscriptome273Y
F033433Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100516753F013184N/AMRDYAFVIKLAGSVLANNEKEAHAKINAHLDDLGEVDSSRYDLGWPDVSWDMEYDLC
Ga0222713_100516754F001460GGAGMLGYTESDLNRMINAIHDSKLFYLRYPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDYTN
Ga0222713_100516755F007468GGAGGLTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNDNLQGKGY
Ga0222713_100516756F000263GGAMNAEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEQELADAQAIEDETEEAMDSMARTEATGRLDTLVELYQLTYQLSFAIGEAYDRELKAGMK
Ga0222713_100516757F033433AGCAGGMNNKTSLEIVEVNYSCSPGGVDEFEVYSLDERDLHNPPIYSSTELEKAVRFCYELGKDFTVRTVAEWEERELAYEASR
Ga0222713_100516759F009685AGGAGGMKMSDQHIDAVLAEAQGLLWGGSETENIAAHNLISKLIQDRMEEKNLK
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Institute for Fundamental Biomedical Research
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