NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10067628

Scaffold Ga0222713_10067628


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10067628 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2655
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015732Metagenome / Metatranscriptome252N
F022415Metagenome / Metatranscriptome214Y
F051133Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100676282F015732AGGAMTKVTNLETAVSIVRNTPDKALALSEIMNILGVSRSNAFVYHTKASKILFSASNVDEVMGKVSPQYKKVSESIQGTSSTKKAQKLAEIDAFLAGNASAKGNPFAALGA
Ga0222713_100676284F022415AGGAGMSRMSQLHMIITDAISCDLSEDLIIDLMVEEGLPREACPEILRVFKQVEAVE
Ga0222713_100676288F051133AGGMNVSRINQRNIELDRLERTNHQRKIEEDYRKVIEKKNIERIIADRVERNMRLDRDKGRYIDVEV
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