NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10106316

Scaffold Ga0222713_10106316


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10106316 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2002
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F038669Metagenome / Metatranscriptome165Y
F063708Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101063162F038669GGAGGMNSTKLEPRLQKLVDLGEPGTDIMHGELKNLMYETEQSLLNVSQSQDTPEYKYLSGRLDALTEIYVMTYNLAFALNERIIARG
Ga0222713_101063163F063708AGAAGGMKTHSTDKLIEYMKIHLISLNQDLQDNPESINVVDIPGQIYAVKHLLEVADEFN
Ga0222713_101063166F000450AGGCGGMGDRANFVFVDGAGDTICLYGHWAGHNMLGKLADAVIAARPRWNDESYATRIAISHLIGDQWNMETGWGLQVNSIGDNEHKIAVINWQQQTFSLHEQDDHRNLENKVLGMKNEALFTMDLTMFCEKYAFEKLLT
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