NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10210952

Scaffold Ga0222713_10210952


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10210952 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013396Metagenome271N
F074549Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_102109522F013396GGAVNSRTILFVLLGLVAVAAVLFVASKNSRMLTAGLPLRIVVASEAEAWKLAGPRAVVVLGTGSMVPYIPAAPKGADPLRTVCALVVLDPNARYADIAIGSLCIYVPVWAGRHVLHQAAQIDGKGWIMTGLGNRDYENRERVTAANFVGIVARTYVWP
Ga0222713_102109523F074549GAGMSLTDILFNAASGGVVGSLLHLGTSFFETWRKKKDAEVEIMLLNAKLQAAEKEAAWTAFTASQKTGDNTLVIPVGTWPWVGSIYVLVEAFRQLTRPGLTWAGFIFLTSVYFSSSPEVRATLSPEIQFGSWTLIFWWVGARYNK
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