NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10252794

Scaffold Ga0222713_10252794


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10252794 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003521Metagenome / Metatranscriptome481Y
F011751Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_102527941F003521AGGAMKSLVSNIRDYFNRRTKVIDTYKEANVNRKALVIENSESAKRLLRNDDFALLFNLYRFYLLEMLEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK
Ga0222713_102527942F011751N/AQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAGTCLKGQPFMDALSVENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQVPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQEMQSKVALNQAKVQESGSITALNMKKAEDIDMDNYFESLAAKRGKLSAVEID
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