NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10281909

Scaffold Ga0222713_10281909


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10281909 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014737Metagenome / Metatranscriptome260Y
F023109Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_102819091F014737GAGMTTINAVTGYQINHAEFVKLTVGNAGTVYTFCNAAAPITVGGITFSNLGALLNVGDVQRDIKATSDDMTIALTGIDSSNIALILSSDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVAITEDFNSELRTRIATCSISCSSMRRVLENRLSGVKTNQNNWQFIYAGDTSMNRVSEISNTFFDFGSPPKTQTQASETTVTMENSSVKEIP
Ga0222713_102819092F023109N/AMIRQATRYDIPRLLEIVEAYAYENPIKKLGESHNHFPRYVEELLFSIIQGRGFIYIDSHLRGAIVAYKSSNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDERAKEMLKAGDVDFVCTSISANG
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