NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10344409

Scaffold Ga0222713_10344409


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10344409 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006506Metagenome / Metatranscriptome371Y
F010472Metagenome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_103444092F010472GGAGMSALAELMNSGNTWAAERAQYALEVHQAVGAGQLSASEAKEILQDLISTDKLEEAAADQQARAALVFGVQQLISLY
Ga0222713_103444093F006506AGGMKRLATLLVIISLTGCASIMEYIPSSWDANQAKSITDIQQQAKHIDCKQDLVPQVNQLAKEVEWFDIYSQTKPTRDINKLTGTIKDTVKELQDRVIKGPVSPLYCDLKKKIIQQQADILAKSVQGRF
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