NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10000532

Scaffold Ga0222712_10000532


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10000532 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49540
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (79.63%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F006841Metagenome / Metatranscriptome363Y
F010085Metagenome / Metatranscriptome308Y
F024319Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000053210F000258GGAGGMTTDYKLDATLEIRKYLWDQILTIGILEENDYYSDNVGEAIVPIIPVQQSPELNQFLSGKSHIVYDKIGMSYEDNWAICCEQVLFTIYSTDVSEINQIRNFMTDLFRRMDGSAKDLNLWSGVSDKFKFYSIFISEISPTAPSEELQGFLSADVVLEIKYSRISDTNGRFI
Ga0222712_1000053238F010085AGTAGGMKIQVVSKYIALSEEGLVPVLECPMDQGLLFCNLAEDDSIYLYCLSCEYKNILGLEVYNVLLNKIKV
Ga0222712_1000053248F024319AGGMTNRIWESLNDYQNESDAKRLGYVTCSAGCGRVTAWSLCVMCGGNYATHNLLGKGSN
Ga0222712_100005328F006841AGGAGGLATTVYSVEEITLQNGATVKLKPLSIKELRKFMIAVQRTADVTTEDETLDILIDACAVALEKQLPDLVADRDLLEDALDVPTINRILEVCGGIKLDDPNQLAAMVLAGQN
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Institute for Fundamental Biomedical Research
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