NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10000787

Scaffold Ga0222712_10000787


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10000787 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40618
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (91.53%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F001599Metagenome / Metatranscriptome665Y
F001706Metagenome / Metatranscriptome648Y
F006544Metagenome / Metatranscriptome370Y
F008808Metagenome327Y
F024097Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000078712F001599AGTAGGMTEETKQDTVAIAWCDNGLVDGKFMQGVADVLLKSGIQFETSIRSGGNQIARQREHVIRYWYEKNLSDWLLWVDSDVVISPEKFLRLWNKKDKDKHPIVTGVYFTSKTPEEPLMIPSPTVFEFVEKGDTIGIMPVHPLPDDKFIKVHAAGMGFVLMHRSVVEKIIKNVPHVPMFAEAGSEKTFIGEDIYFFSLCGKAGIEVWCDTGATVPHMKRFSFDEHYYKAFFGGVEKKNEKKIIVPQGAGKLITPK
Ga0222712_1000078726F000368AGAAGGMNPKFKQVALSWFRAAAAAVVALYLTGITDPKQLASAAIAGVAGPVLKWLDPSASEFGRGAE
Ga0222712_1000078733F024097AGGTGGVSSYGKRKGATFETSVMKWLRSKKVFAERLTKAGSKDEGDIVAMVAGQTYIFELKATKKIDLPKFWAEATVEAENYAKARGLDEVPPRYVIVKRRMAGIDKAWVVENLEQWIERNCE
Ga0222712_1000078736F008808AGGAGMNRKEVPPCPECGQRFENVFDATDHLLEDDEEFDPALVLPNGYRLMIGSLLRCMYRYADSPENIKGIAESTYMTLFTAETQPNMVAKMIQDMIVDTQMTDLDEELKQLLERGK
Ga0222712_1000078755F006544AGGAGGMTTLAAIQGDGWSVIGCDSRSSDDSGRPIDMATPKIVDNNGILIAGSGAGRGSNLLQYGWKAPKPRVGEDLDLFVTQKFIPAMRKLFVDAGYDMKEDGDAAAHDSQFLISIRGIIYPIFEDYSWDRDVRGIYYSGSGGDIAIGVMEALRINRVETATQAEKIIKKAIDIASKWDIYTGGPIITKIQYSK
Ga0222712_100007876F001706AGGMAYHWQDHPVEVEGCFGCKVMGLQVNAGDAKRDIPEKKWQAELRAYEDARAQGIQPNGTSMAQIQAAHKASEALGKAYDGDTMPKAHQITDKVATTMKEVGLV
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